Index

C

check_rd_integration_run() (in module chemreac.util.testing) chemreac.util.analysis (module) chemreac.util.banded (module) chemreac.util.grid (module) chemreac.util.plotting (module)

chemreac.util.pyutil (module) chemreac.util.stoich (module) chemreac.util.table (module) chemreac.util.testing (module) coloured_spy() (in module chemreac.util.plotting)

E

eval_jacobian() (in module chemreac.util.analysis)

G

get_banded() (in module chemreac.util.banded)

get_jac_row_from_banded() (in module chemreac.util.banded)

I

identify_equilibria() (in module chemreac.util.stoich)

M

monotonic() (in module chemreac.util.pyutil)

P

padded_centers() (in module chemreac.util.grid) plot_C_vs_t_and_x() (in module chemreac.util.plotting) plot_C_vs_t_in_bin() (in module chemreac.util.plotting) plot_C_vs_x() (in module chemreac.util.plotting) plot_fields() (in module chemreac.util.plotting)

plot_jacobian() (in module chemreac.util.plotting) plot_per_reaction_contribution() (in module chemreac.util.plotting) plot_solver_linear_error() (in module chemreac.util.plotting) plot_solver_linear_excess_error() (in module chemreac.util.plotting) progress (class in chemreac.util.pyutil) pxci_to_bi() (in module chemreac.util.grid)

R

radyields2pdf_table() (in module chemreac.util.table)

S

save_and_or_show_plot() (in module chemreac.util.plotting) set_dict_defaults_inplace() (in module chemreac.util.pyutil) solver_linear_error() (in module chemreac.util.analysis)

solver_linear_error_from_integration() (in module chemreac.util.analysis) spat_ave_rmsd_vs_time() (in module chemreac.util.testing) stencil_pxci_lbounds() (in module chemreac.util.grid) suggest_t0() (in module chemreac.util.analysis)