Index

A

analytic() (in module const_surf_conc) analytic_diffusion (module) analytic_N_scaling (module)

analytic_x() (in module equilibrium) aqueous_radiolysis (module) auto_efield (module)

C

check_rd_integration_run() (in module chemreac.util.testing) chemreac.chemistry (module) chemreac.core (module) chemreac.integrate (module) chemreac.util.analysis (module) chemreac.util.banded (module) chemreac.util.grid (module) chemreac.util.physchem (module)

chemreac.util.plotting (module) chemreac.util.pyutil (module) chemreac.util.stoich (module) chemreac.util.table (module) chemreac.util.testing (module) coloured_spy() (in module chemreac.util.plotting) const_surf_conc (module) cylindrical_analytic() (in module analytic_diffusion)

D

decay (module)

decompose_yield_into_rate_coeffs() (in module chemreac.util.stoich)

E

electrical_mobility_from_D() (in module chemreac.util.physchem)

equilibrium (module)

F

flat_analytic() (in module analytic_diffusion)

four_species (module)

G

gaussian() (in module auto_efield) get_banded() (in module chemreac.util.banded) get_coeff_mtx() (in module chemreac.util.stoich)

get_Cref() (in module decay) get_jac_row_from_banded() (in module chemreac.util.banded) get_mobility() (chemreac.chemistry.Substance method)

I

identify_equilibria() (in module chemreac.util.stoich) integrate_rd() (in module analytic_diffusion) (in module aqueous_radiolysis) (in module auto_efield) (in module const_surf_conc) (in module decay) (in module equilibrium) (in module four_species) (in module steady_state_approx)

Integration (class in chemreac.integrate)

K

k (chemreac.chemistry.ReactionSystem attribute)

M

main() (in module analytic_N_scaling) mk_sn_dict_from_names() (in module chemreac.chemistry)

monotonic() (in module chemreac.util.pyutil)

N

nr (chemreac.chemistry.ReactionSystem attribute)

ns (chemreac.chemistry.ReactionSystem attribute)

P

padded_centers() (in module chemreac.util.grid) pair_of_gaussians() (in module auto_efield) plot_C_vs_t_and_x() (in module chemreac.util.plotting) plot_C_vs_t_in_bin() (in module chemreac.util.plotting) plot_C_vs_x() (in module chemreac.util.plotting) plot_fields() (in module chemreac.util.plotting)

plot_jacobian() (in module chemreac.util.plotting) plot_per_reaction_contribution() (in module chemreac.util.plotting) plot_solver_linear_error() (in module chemreac.util.plotting) plot_solver_linear_excess_error() (in module chemreac.util.plotting) pxci_to_bi() (in module chemreac.util.grid)

R

Reaction (class in chemreac.chemistry) ReactionDiffusion (class in chemreac.core) ReactionSystem (class in chemreac.chemistry) rsys2pdf_table() (in module chemreac.util.table)

rsys2table() (in module chemreac.util.table) rsys2tablines() (in module chemreac.util.table) run() (in module chemreac.integrate)

S

save_and_or_show_plot() (in module chemreac.util.plotting) set_dict_defaults_inplace() (in module chemreac.util.pyutil) sigm() (in module auto_efield) (in module chemreac.integrate) solver_linear_error() (in module chemreac.util.analysis) solver_linear_error_from_integration() (in module chemreac.util.analysis) spat_ave_rmsd_vs_time() (in module chemreac.util.testing)

spherical_analytic() (in module analytic_diffusion) steady_state_approx (module) stencil_pxci_lbounds() (in module chemreac.util.grid) Substance (class in chemreac.chemistry) suggest_t0() (in module chemreac.util.analysis)

T

to_ReactionDiffusion() (chemreac.chemistry.ReactionSystem method)